The only unqualified political party in New York that has more than a single candidate for any federal or state office (not counting fusion nominations) is the Medical Freedom Party. It placed one of its own nominees on the ballot for U.S. House, and four for legislature. It also nominated a few Republican nominees. Here is its webpage.
The Independence Party, another unqualified party, also completed some legislative petitions, but they are all instances when the Independence Party nominated the Republican nominee.